*.Rmd RNotebook files: input is an RMarkdown file (with a special header), output appears “inline” in RStudio and code, comments and output are saved in a *.nb.html file that is portable:.*.R Scripts: input is a plain script, and output appears in the Console or Plots pane:.(Transfer the files to a convenient working folder(s), and modify the paths in the scripts below.)

The following examples can be reproduced using this data set: cru10min30_bio.nc, and the following shapefile components: The packages can be installed as follows install.packages('rmarkdown') RMarkdown is implemented by two packages (and their dependencies), rmarkdown and knitr. RNotebook and RMarkdown files in RStudio can be viewed as elements in a hierarchy of increasingly well-documented and reproducible code, with ordinary R script files *.R as the lowest level, and complicated RMarkdown web sites or even books at the highest level.

Rmd files, allowing the resulting combinations of text, code and output to be nicely formatted.

RStudio allows the use of Markdown formatting styles within RMarkdown.

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